Publications
Find valuable resources and research from publications by faculty members in the Department of Biology. These publications are beneficial as secondary readings for your assignments or papers.
The following list is a selection of recent publications. To see a complete list, visit PubMed link.
Climate-sensitive forecasts of marked short-term and long-term changes in the distribution or abundances of Northwestern boreal landbirds.
Raymundo, A.A.P., T. Micheletti, S. Haché, D. Stralberg, F.E.C. Stewart, J. Tremblay, C. Barros, I.M.S. Eddy, A.M. Chubaty, M. Leblond, C.L. Mahon, S.L. Van Wilgenburg, E.M. Bayne, F. Schmiegelow, T.D.S. Docherty, E.J.B. McIntire, S.G. Cumming. 2024. Global Ecology and Conservation. doi: 10.1016/j.ecochg.2023.100079
Using global remote camera data of a “solitary” species complex to evaluate the drivers of group formation.
Twining, J.P., C. Sutherland, [32 co-authors], F.E.C. Stewart, J.T. Fisher, A.K. Fuller, K.A. Perkins, R.A. Powell. 2024. Proceedings of the National Academy of Sciences. doi: 10.1073/pnas.2312252121
On the expression of reproductive plasticity in Drosophila melanogaster females in spatial and socially varying environments.
MicroPubl Biol. 2024 Apr 18;2024:10.17912/micropub.biology.001125. doi: 10.17912/micropub.biology.001125.
Distinct profiles of plant immune resilience revealed by natural variation in warm temperature-modulated disease resistance among Arabidopsis accessions.
Plant Cell Environ. 2024 Aug 20. doi: 10.1111/pce.15098.
The influence of postfire recovery and environmental conditions on boreal vegetation
Ecosphere. 2024. doi: https://doi.org/10.1002/ecs2.4605.
Natural allelic diversity of the calcium signaling regulators in plants.
Mol Cells. 2024 Aug 2;47(9):100104. doi: 10.1016/j.mocell.2024.100104.
Geographic variation in evolutionary rescue under climate change in a crop pest-predator system.
Evol Appl. 2024 Jul 22;17(7):e13750. doi: 10.1111/eva.13750.
Beyond simple vs. complex: exploring the nuanced and unexpected effects of spatial environmental complexity on mating patterns and female fecundity.
J Evol Biol. 2024 Aug 27;37(9):1043-1054. doi: 10.1093/jeb/voae089.
Exposure to Total Suspended Solids (TSS) Impacts Gill Structure and Function in Adult Zebrafish.
Bull Environ Contam Toxicol. 2024 Jul 16;113(2):14. doi: 10.1007/s00128-024-03922-w.
Can remotely sensed catchment to lake area ratios predict mercury levels in subarctic fishes?
Environ Res. 2024 Nov 1;260:119545. doi: 10.1016/j.envres.2024.119545.
Gill raker and pyloric caeca counts differ between Arctic char (Salvelinus alpinus) and Dolly Varden (S. malma) populations across their ranges.
J Fish Biol. 2024 Jul 4. doi: 10.1111/jfb.15785. Online ahead of print.
Production, Isolation, and Detection of Poly IC in Extracellular Vesicles from U937 Cells.
Methods Mol Biol. 2024;2813:235-244. doi: 10.1007/978-1-0716-3890-3_16.
Fish gill chemosensing: knowledge gaps and inconsistencies.
J Comp Physiol B. 2024 May 17. doi: 10.1007/s00360-024-01553-5.
AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods.
Brief Bioinform. 2024 Mar 27;25(3):bbae229. doi: 10.1093/bib/bbae229.
DeepReg: a deep learning hybrid model for predicting transcription factors in eukaryotic and prokaryotic genomes.
Sci Rep. 2024 Apr 21;14(1):9155. doi: 10.1038/s41598-024-59487-5.
The hypoxic ventilatory response and oxygen sensing in fishes
. Editors-in-Chief: Sarah L. Alderman and Todd E. Gillis. https://doi.org/10.1016/B978-0-323-90801-6.00176-2
An updated review of the post-glacial history, ecology, and diversity of Arctic char (Salvelinus alpinus) and Dolly Varden (S. malma)
Environ Biol Fish. 107, 121–154 (2024). https://doi.org/10.1007/s10641-023-01492-0.
Low-severity fires in the boreal region: reproductive implications for black spruce stands in between stand-replacing fire events.
Ann Bot. 2024 Apr 9:mcae055. doi: 10.1093/aob/mcae055.
The plant disease triangle facing climate change: a molecular perspective.
Trends Plant Sci. 2024 Apr 4:S1360-1385(24)00060-8. doi: 10.1016/j.tplants.2024.03.004.
Leguminous green manure intercropping changes the soil microbial community and increases soil nutrients and key quality components of tea leaves.
Hortic Res. 2024 Jan 17;11(3):uhae018. doi: 10.1093/hr/uhae018.
The role of the antennal glands and gills in acid-base regulation and ammonia excretion of a marine osmoconforming brachyuran.
Comp Biochem Physiol A Mol Integr Physiol. 2024 Jun;292:111619. doi: 10.1016/j.cbpa.2024.111619.
Improved Viability of Spray-Dried Pantoea agglomerans for Phage-Carrier Mediated Control of Fire Blight.
Viruses. 2024 Feb 6;16(2):257. doi: 10.3390/v16020257.
Dominance of net autotrophy in arid landscape low relief polar lakes, Nunavut, Canada.
Glob Chang Biol. 2024 Feb;30(2):e17193. doi: 10.1111/gcb.17193.
A flexible framework for spatial capture-recapture with unknown identities.
Biometrics. 2024 Jan 29;80(1):ujad019. doi: 10.1093/biomtc/ujad019.
Migration timing and marine space use of an anadromous Arctic fish (Arctic Char, Salvelinus alpinus) revealed by local spatial statistics and network analysis.
Mov Ecol. 2024 Feb 3;12(1):12. doi: 10.1186/s40462-024-00455-z.
Immunostimulant effects of Pituitary Adenylate Cyclase-Activating Polypeptide and double-stranded (ds)RNA in Orconectes propinquus.
Fish Shellfish Immunol. 2024 Mar;146:109388. doi: 10.1016/j.fsi.2024.109388.
Branchial CO2 and ammonia excretion in crustaceans: Involvement of an apical Rhesus-like glycoprotein.
Acta Physiol (Oxf). 2024 Feb;240(2):e14078. doi: 10.1111/apha.14078.
How landscape traits affect boreal mammal responses to anthropogenic disturbance.
Sci Total Environ. 2024 Mar 10;915:169285. doi: 10.1016/j.scitotenv.2023.169285.
Functional analysis of the AUG initiator codon context reveals novel conserved sequences that disfavor mRNA translation in eukaryotes.
Nucleic Acids Res. 2024 Feb 9;52(3):1064-1079.
Sexual selection and the nonrandom union of gametes: retesting for assortative mating by fitness in Drosophila melanogaster.
Evolution. 2024 Jan 4;78(1):26-38. doi: 10.1093/evolut/qpad191.
Extensive gene loss parallels kidney aglomerulism in Syngnathidae.
Curr Biol. 2023 Oct 23;33(20):R1044-R1046. doi: 10.1016/j.cub.2023.08.045.
Cytotoxicity of the field lampricide 3-trifluoromethyl-4-nitrophenol (TFM) in tadpole cell lines from North American frogs.
In Vitro Cell Dev Biol Anim. 2023 Dec;59(10):790-795. doi: 10.1007/s11626-023-00825-8.
Mycorrhizal feedbacks influence global forest structure and diversity.
Commun Biol. 2023 Oct 19;6(1):1066. doi: 10.1038/s42003-023-05410-z.
Environ Pollut. 2023 Nov 15;337:122598. doi: 10.1016/j.envpol.2023.122598.
Ecol Evol. 2023 Sep 14;13(9):e10464. doi: 10.1002/ece3.10464.
Overexpression of BnNAC19 in Brassica napus enhances resistance to Leptosphaeria maculans, the blackleg pathogen of canola
Plant Pathology. 00, 1–11. Available from: https://doi.org/10.1111/ppa.13791.
Fast genome-based delimitation of Enterobacterales species.
PLoS One. 18(9):e0291492. doi: 10.1371/journal.pone.0291492.
Differences in the transcriptome response in the gills of sea lamprey acutely exposed to 3-trifluoromethyl-4-nitrophenol (TFM), niclosamide or a TFM:niclosamide mixture.
Comp Biochem Physiol Part D Genomics Proteomics. 48:101122. doi: 10.1016/j.cbd.2023.101122.
Hypersensitive response to interferon-stimulated gene (ISG)-inducing double-stranded RNA in American bullfrog tadpole fibroblasts.
Dev Comp Immunol. 148:104918. doi: 10.1016/j.dci.2023.104918.
Upstream migrant sea lamprey (Petromyzon marinus) show signs of increasing oxidative stress but maintain aerobic capacity with age.
Comp Biochem Physiol A Mol Integr Physiol. 285:111503. doi: 10.1016/j.cbpa.2023.111503.
25 Years of thermomorphogenesis research: milestones and perspectives.
Trends Plant Sci. S1360-1385(23)00232-7. doi: 10.1016/j.tplants.2023.07.001.
Mitochondrial alternative oxidase across the tree of life: Presence, absence, and putative cases of lateral gene transfer.
Biochim Biophys Acta Bioenerg. 149003. doi: 10.1016/j.bbabio.2023.149003.
Detection of Protein-Protein Interactions Utilizing the Split-Ubiquitin Membrane-Based Yeast Two-Hybrid System.
Methods Mol Biol. 2690:37-57. doi: 10.1007/978-1-0716-3327-4_4.
Structural diversity and stress regulation of the plant immunity-associated CALMODULIN-BINDING PROTEIN 60 (CBP60) family of transcription factors in Solanum lycopersicum (tomato).
Funct Integr Genomics. 23(3):236. doi: 10.1007/s10142-023-01172-3.
Sequence Similarity Among Structural Repeats in the Piezo Family of Mechanosensitive Ion channels.
Microb Physiol. doi: 10.1159/000531468.
CBP60-DB: An AlphaFold-predicted plant kingdom-wide database of the CALMODULIN-BINDING PROTEIN 60 protein family with a novel structural clustering algorithm.
Plant Direct. 7(7):e509. doi: 10.1002/pld3.509.
Permafrost thaw induces short-term increase in vegetation productivity in northwestern Canada.
Glob Chang Biol. doi: 10.1111/gcb.16812.
The Carotid Body "Tripartite Synapse": Role of Gliotransmission.
Adv Exp Med Biol. 1427:185-194. doi: 10.1007/978-3-031-32371-3_20.
Molecular regulation of the salicylic acid hormone pathway in plants under changing environmental conditions.
Trends Biochem Sci. 29:S0968-0004(23)00128-7. doi: 10.1016/j.tibs.2023.05.004.
WssI from the Gram-Negative Bacterial Cellulose Synthase is an O-acetyltransferase that Acts on Cello-oligomers with Several Acetyl Donor Substrates.
J Biol Chem. 22:104849. doi: 10.1016/j.jbc.2023.104849.
Will this umbrella leak? A caribou umbrella index for boreal landbird conservation
Conservation Science and Practice. https://doi.org/10.1111/csp2.12908
Inflorescences of Cuscuta (Convolvulaceae): Diversity, evolution and relationships with breeding systems and fruit dehiscence modes.
PLoS One. 18(5):e0286100. doi: 10.1371/journal.pone.0286100.
Climate-informed forecasts reveal dramatic local habitat shifts and population uncertainty for northern boreal caribou.
Ecol Appl. 33(3):e2816. doi: 10.1002/eap.2816.
Material Legacies and Environmental Constraints Underlie Fire Resilience of a Dominant Boreal Forest Type.
Ecosystems. 26(3):473-490. doi: 10.1007/s10021-022-00772-7.
Transcriptomic impacts and potential routes of detoxification in a lampricide-tolerant teleost exposed to TFM and niclosamide.
Comp Biochem Physiol Part D Genomics Proteomics. 46:101074. doi: 10.1016/j.cbd.2023.101074.
Comparative analysis of adenylate isopentenyl transferase genes in plant growth-promoting bacteria and plant pathogenic bacteria.
Heliyon. 9(3):e13955. doi: 10.1016/j.heliyon.2023.e13955
Phenotypic extremes or extreme phenotypes? On the use of large and small-bodied "phenocopied" Drosophila melanogaster males in studies of sexual selection and conflict.
Curr Res Insect Sci. 3:100052. doi: 10.1016/j.cris.2023.100052
Animal Rights and Conservation: A Fresh Perspective.
Newman, J.A. Quarterly Review of Biology, 97:141-145.
Allelopathic effects of Epichloe fungal endophytes: experiment and meta-analysis.
Hager, HA, M Gailis & JA Newman. Plant and Soil, DOI: 10.1007/511104-022-05305-8.
Costs, benefits, parasites and mutualists: the use and abuse of the mutualism-parasitism continuum concept for Epichloe fungi.
Newman, JA, S Gillis & HA Hager. Philosophy, Theory and Practice in Biology, 14: 9.
Editorial: Horticultural crops: Interaction with fungal community.
Front Plant Sci. 13:1096201. doi: 10.3389/fpls.2022.1096201
Unique Opportunities for Future Research on the Alternative Oxidase of Plants.
Plant Physiol. kiac555. doi: 10.1093/plphys/kiac555.
Lactate sensing by neuroepithelial cells isolated from the gills of killifish (Fundulus heteroclitus).
J Exp Biol. 225(23):jeb245088. doi: 10.1242/jeb.245088.
Using long, sequence-specific dsRNA to knockdown inducible protein expression and virus production via an RNAi-like mechanism.
CsMYB Transcription Factors Participate in Jasmonic Acid Signal Transduction in Response to Cold Stress in Tea Plant (Camellia sinensis).
Comparative genomic and functional analysis of Arthrobacter sp. UMCV2 reveals the presence of luxR-related genes inducible by the biocompound N, N-dimethylhexadecilamine.
A First Draft of the Core Fungal Microbiome of Schedonorus arundinaceus with and without Its Fungal Mutualist Epichloë coenophiala.
J Fungi. 8(10):1026. doi: 10.3390/jof8101026.
Comparative Metabolomics Analysis of Stigmas and Petals in Chinese Saffron (Crocus sativus) by Widely Targeted Metabolomics.
Plants. 11(18):2427. doi: 10.3390/plants11182427.
More tools for our toolkit: the application of HEL-299 cells and dsRNA-nanoparticles to study human coronaviruses in vitro.
Semple SL, Alkie TN, Jenik K, Warner BM, Tailor N, Kobasa D, DeWitte-Orr SJ. Virus Res. 321:198925. doi: 10.1016/j.virusres.2022.198925.
Non-synonymous to synonymous substitutions suggest that orthologs tend to keep their functions, while paralogs are a source of functional novelty.
Escorcia-Rodríguez JM, Esposito M, Freyre-González JA, Moreno-Hagelsieb G. PeerJ. 10:e13843. doi: 10.7717/peerj.13843.
Freshwater adaptation in prickly sculpin (Pisces: Cottidae): intraspecific comparisons reveal evidence for water pH and Na+ concentration driving diversity in gill H+-ATPase and ion regulation.
Liu S, Wilson JM, Taylor EB, Richards JG. J Exp Biol. 225(18):jeb243500. doi: 10.1242/jeb.243500.
Skin ionocyte density of amphibious killifishes is shaped by phenotypic plasticity and constitutive interspecific differences.
Tunnah L, Turko AJ, Wright PA. J Comp Physiol B. doi: 10.1007/s00360-022-01457-2.
The gastric proton pump in gobiid and mudskipper fishes. Evidence of stomach loss
Esfandiyari K, Pfeifer LJ, Farahani MA, Malakpour Kolbadinezhad S, Castro LF, Wilson JM.
Comp Biochem Physiol A Mol Integr Physiol. 274:111300. doi: 10.1016/j.cbpa.2022.111300.
Variation in the Transcriptome Response and Detoxification Gene Diversity Drives Pesticide Tolerance in Fishes.
Lawrence MJ, Grayson P, Jeffrey JD, Docker MF, Garroway CJ, Wilson JM, Manzon RG, Wilkie MP, Jeffries KM. Environ Sci Technol. doi: 10.1021/acs.est.2c00821.
Characterization of 3 different types of aquaporins in Carcinus maenas and their potential role in osmoregulation.
Nash MT, Quijada-Rodriguez AR, Allen GJP, Wilson JM, Weihrauch D. Comp Biochem Physiol A Mol Integr Physiol. 272:111281. doi: 10.1016/j.cbpa.2022.111281.
FastANI, Mash and Dashing equally differentiate between Klebsiella species.
Hernández-Salmerón JE, Moreno-Hagelsieb G. PeerJ. 10:e13784. doi: 10.7717/peerj.13784.
The SGNH hydrolase family: a template for carbohydrate diversity.
Anderson AC, Stangherlin S, Pimentel KN, Weadge JT, Clarke AJ. Glycobiology. doi: 10.1093/glycob/cwac045.
Carbon and nitrogen cycling dynamics following permafrost thaw in the Northwest Territories, Canada.
Dieleman CM, Day NJ, Holloway JE, Baltzer J, Douglas TA, Turetsky MR. Sci Total Environ. 845:157288. doi: 10.1016/j.scitotenv.2022. 157288.
Increasing the resilience of plant immunity to a warming climate.
Kim JH, Castroverde CDM, Huang S, Li C, Hilleary R, Seroka A, Sohrabi R, Medina-Yerena D, Huot B, Wang J, Nomura K, Marr SK, Wildermuth MC, Chen T, MacMicking JD, He SY. Nature. doi: 10.1038/s41586-022-04902-y.
Evaluating expert-based habitat suitability information of terrestrial mammals with GPS-tracking data.
Glob Ecol Biogeogr. 31(8):1526-1541. doi: 10.1111/geb.13523.
Dining on the dead in the deep: Active NH4 + excretion via Na+ /H+ (NH4 + ) exchange in the highly ammonia tolerant Pacific hagfish, Eptatretus stoutii.
Clifford AM, Wilkie MP, Edwards SL, Tresguerres M, Goss GG.Clifford AM, Wilkie MP, Edwards SL, Tresguerres M, Goss GG. Acta Physiol (Oxf). e13845. doi: 10.1111/apha.13845.
Considering Fish as Recipients of Ecosystem Services Provides a Framework to Formally Link Baseline, Development, and Post-operational Monitoring Programs and Improve Aquatic Impact Assessments for Large Scale Developments.
RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12.
Tierrafría VH, Rioualen C, Salgado H, Lara P, Gama-Castro S, Lally P, Gómez-Romero L, Peña-Loredo P, López-Almazo AG, Alarcón-Carranza G, Betancourt-Figueroa F, Alquicira-Hernández S, Polanco-Morelos JE, García-Sotelo J, Gaytan-Nuñez E, Méndez-Cruz CF, Muñiz LJ, Bonavides-Martínez C, Moreno-Hagelsieb G, Galagan JE, Wade JT, Collado-Vides J. Microb Genom. doi: 10.1099/mgen.0.000833.
Retention of larval skin traits in adult amphibious killifishes: a cross-species investigation.
Tunnah L, Wilson JM, Wright PA. J Comp Physiol B. doi: 10.1007/s00360-022-01436-7.
An in vitro 3D annulus fibrosus cell culture model with type I collagen: An examination of cell-matrix interactions.
Molladavoodi S, DeWitte-Orr SJ, Gregory DE. JOR Spine. 5(1):e1193. doi: 10.1002/jsp2.1193.
A multi-tasking stomach: functional coexistence of acid-peptic digestion and defensive body inflation in three distantly related vertebrate lineages.
Ferreira P, Kwan GT, Haldorson S, Rummer JL, Tashiro F, Castro LFC, Tresguerres M, Wilson JM. Biol Lett. 18(2):20210583. doi: 10.1098/rsbl.2021.0583.
The evolution of cytogenetic traits in Cuscuta (Convolvulaceae), the genus with the most diverse chromosomes in angiosperms.
Ibiapino, A., García, M.A., Amorim, B., Baez, M., Costea, M., Stefanović, S. and Pedrosa-Harand, A. 2022. Front. Plant Sci. 13: 842260.
Understanding among-lake variability of mercury concentrations in Northern Pike (Esox lucius): A whole-ecosystem study in subarctic lakes.
Moslemi-Aqdam M, Baker LF, Baltzer JL, Branfireun BA, Evans MS, Laird BD, Low G, Low M, Swanson HK. Sci Total Environ. 822:153430. doi: 10.1016/j.scitotenv.2022.153430.
Niclosamide Is a Much More Potent Toxicant of Mitochondrial Respiration than TFM in the Invasive Sea Lamprey (Petromyzon marinus).
Borowiec BG, Birceanu O, Wilson JM, McDonald AE, Wilkie MP. Environ Sci Technol. doi: 10.1021/acs.est.1c07117.
Salicylic Acid and N-Hydroxypipecolic Acid at the Fulcrum of the Plant Immunity-Growth Equilibrium.
Shields A, Shivnauth V and Castroverde CDM. Front. Plant Sci. 13:841688. doi: 10.3389/fpls.2022.841688
PERFICT: A Re-imagined foundation for predictive ecology.
McIntire EJB, Chubaty AM, Cumming SG, Andison D, Barros C, Boisvenue C, Haché S, Luo Y, Micheletti T, Stewart FEC. Ecol Lett. doi: 10.1111/ele.13994.
Current water quality guidelines across North America and Europe do not protect lakes from salinization.
Hintz WD, Arnott SE, Symons CC, Greco DA, McClymont A, Brentrup JA, Cañedo-Argüelles M, Derry AM, Downing AL, Gray DK, Melles SJ, Relyea RA, Rusak JA, Searle CL, Astorg L, Baker HK, Beisner BE, Cottingham KL, Ersoy Z, Espinosa C, Franceschini J, Giorgio AT, Göbeler N, Hassal E, Hébert MP, Huynh M, Hylander S, Jonasen KL, Kirkwood AE, Langenheder S, Langvall O, Laudon H, Lind L, Lundgren M, Proia L, Schuler MS, Shurin JB, Steiner CF, Striebel M, Thibodeau S, Urrutia-Cordero P, Vendrell-Puigmitja L, Weyhenmeyer GA. Proc Natl Acad Sci U S A. 119(9):e2115033119. doi: 10.1073/pnas.2115033119.
Climate sensitivity of the complex dynamics of the green spruce aphid-Spruce plantation interactions: Insight from a new mechanistic model.
Thornley JHM, Newman JA. PLoS One. 17(2):e0252911. doi: 10.1371/journal.pone.0252911.
Karyotype asymmetry in Cuscuta L. subgenus Pachystigma reflects its repeat DNA composition.
Chromosome Res. doi: 10.1007/s10577-021-09683-0.
Disturbances to energy metabolism in juvenile lake sturgeon (Acipenser fulvescens) following exposure to niclosamide.
Ecotoxicol Environ Saf. 229:112969. doi: 10.1016/j.ecoenv.2021.112969.
New Insights into the Chloroplast Outer Membrane Proteome and Associated Targeting Pathways
Fish M, Nash D, German A, Overton A, Jelokhani-Niaraki M, Chuong SDX, Smith MD. Int. J. Mol. Sci. 23, 1571.
Uncoupling Proteins and Regulated Proton Leak in Mitochondria.
Ardalan A, Smith MD, Jelokhani-Niaraki M. Int. J. Mol. Sci. 23(3):1528. https://doi.org/10.3390/ijms23031528The Functional Differences between the GroEL Chaperonin of Escherichia coli and the HtpB Chaperonin of Legionella pneumophila Can Be Mapped to Specific Amino Acid Residues.
Biomolecules. 12(1):59. doi: 10.3390/biom12010059.
Novel spikey ionocytes are regulated by cortisol in the skin of an amphibious fish.
Proc Biol Sci. 288(1965):20212324. doi: 10.1098/rspb.2021.2324.
Different Metabolic Roles for Alternative Oxidase in Leaves of Palustrine and Terrestrial Species.
Front Plant Sci. 12:752795. doi: 10.3389/fpls.2021.752795.
Dissolved Organic Matter Mitigates the Acute Toxicity of Thulium to Hyalella azteca but Ca, Mg and Na Do Not.
Arch Environ Contam Toxicol. 81(4):637-647. doi: 10.1007/s00244-021-00898-0
Notes on the systematics of Cuscutasect.Subulatae (subg. Grammica) with the description of Cuscutamantiqueirana, a new species from Brazil.
PhytoKeys. 184:27-44. doi: 10.3897/phytokeys.184.69037.
A Toxic Unit and Additive Index Approach to Understanding the Interactions of 2 Piscicides, 3-Trifluoromethyl-4-Nitrophenol and Niclosamide, in Rainbow Trout.
Environ Toxicol Chem. 40(5):1419-1430. doi: 10.1002/etc.4994.
Increasing fire and the decline of fire adapted black spruce in the boreal forest.
Baltzer JL, Day NJ, Walker XJ, Greene D, Mack MC, Alexander HD, Arseneault D, Barnes J, Bergeron Y, et al. Proc Natl Acad Sci U S A. 118(45):e2024872118. doi: 10.1073/pnas.2024872118.
Salicylic acid: A key regulator of redox signalling and plant immunity
Saleem M, Fariduddin Q, Castroverde CDM. Plant Physiol Biochem. 168:381-397. doi: 10.1016/j.plaphy.2021.10.011.
Assessing Pathways of Climate Change Effects in SpaDES: An Application to Boreal Landbirds of Northwest Territories Canada.
Micheletti T, Stewart FEC, Cumming SG, Haché S, Stralberg D, Tremblay JA, Barros C, Eddy IMS, Chubaty AM, Leblond M, Pankratz RF, Mahon CL, Van Wilgenburg SL, Bayne EM, Schmiegelow F and McIntire EJB. Front. Ecol. Evol. 9:679673. doi: 10.3389/fevo.2021.679673
The effect of marine dissolved organic carbon on nickel accumulation in early life-stages of the sea urchin, Strongylocentrotus purpuratus
Blewett TA, Leonard EM, Glover CN, McClelland GB, Wood CM, McGeer JC, Santore RC, Smith DS. Comp Biochem Physiol C Toxicol Pharmacol. 250:109150. doi: 10.1016/j.cbpc.2021.109150.
Joint effects of climate, tree size, and year on annual tree growth derived from tree-ring records of ten globally distributed forests
Anderson-Teixeira KJ, Herrmann V, Rollinson CR, Gonzalez B, Gonzalez-Akre EB, Pederson N, Alexander MR, Allen CD, Alfaro-Sánchez R, Awada T, Baltzer JL, et al. Glob Chang Biol. doi: 10.1111/gcb.15934.
Molecular Mechanisms of Nitric Oxide (NO) Signaling and Reactive Oxygen Species (ROS) Homeostasis during Abiotic Stresses in Plants
Wani KI, Naeem M, Castroverde CDM, Kalaji HM, Albaqami M, Aftab T. Int J Mol Sci. 22(17):9656. doi: 10.3390/ijms22179656
PathFams: statistical detection of pathogen-associated protein domains
Lobb B, Tremblay BJ, Moreno-Hagelsieb G, Doxey AC. BMC Genomics. 22(1):663. doi: 10.1186/s12864-021-07982-8.
The lampricide 3-trifluoromethyl-4- nitrophenol causes temporary metabolic disturbances in juvenile lake sturgeon (Acipenser fulvescens): implications for sea lamprey control and fish conservation
Ionescu RA, Hepditch SLJ, Wilkie MP. Conserv Physiol. 9(1):coab069. doi: 10.1093/conphys/coab069.
Characterization of a bovine intestinal myofibroblast cell line and stimulation using phytoglycogen-based nanoparticles bound to inosine monophosphate
Jenik K, Alkie TN, Moore E, Dejong JD, Lee LEJ, DeWitte-Orr SJ. In Vitro Cell Dev Biol Anim. 57(1):86-94. doi: 10.1007/s11626-020-00536-4.
Permafrost condition determines plant community composition and community-level foliar functional traits in a boreal peatland
Standen KM, Baltzer JL. Ecol Evol, 11:10133-10146. doi: 10.1002/ece3.7818.
Biphasic Proton Transport Mechanism for Uncoupling Proteins
Ardalan A, Sowlati-Hashjin S, Oduwoye H, Uwumarenogie SO, Karttunen M, Smith MD, Jelokhani-Niaraki M. J Phys Chem B, doi: 10.1021/acs.jpcb.1c04766.
The effect of marine dissolved organic carbon on nickel accumulation in early life-stages of the sea urchin, Strongylocentrotus purpuratus
Blewett TA, Leonard EM, Glover CN, McClelland GB, Wood CM, McGeer JC, Santore RC, Smith DS. Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology, 250:109150. doi: 10.1016/j.cbpc.2021.109150.
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Analysis of Two SusE-Like Enzymes From Bacteroides thetaiotaomicron Reveals a Potential Degradative Capacity for This Protein Family
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Temperature regulation of plant hormone signaling during stress and development
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Arbuscular mycorrhizal trees influence the latitudinal beta-diversity gradient of tree communities in forests worldwide
Y Zhong, C Chu, JA Myers, GS Gilbert, JA Lutz, J Stillhard, K Zhu, J Thompson, JL Baltzer, et al. Nature Communications, 12: 3137.
Exposure to elevated nutrient load results in structural and functional changes to microbial communities associated with riparian wetland plants Phalaris arundinaceae and Veronica anagallis-aquatica
JW Bannister, LK Clairmont, KJ Stevens & RM Slawson. Rhizosphere, 18: 100350.
Carbonatite rock can enhance plant growth and nutrition depending on crop traits
Jones, J.M., Guinel, F.C. & Antunes, P.M. Plant Soil, 465:335–347.
Chemical Similarity of Co-occurring Trees Decreases With Precipitation and Temperature in North American Forests
BE Sedio, MJ Spasojevic, JA Myers, SJ Wright, MD Person, H Chandrasekaran, JH Dwenger, ML Prechi, CA López, DN Allen, KJ Anderson-Teixeira, JL Baltzer, NA Bourg, BT Castillo, NJ Day, E Dewald-Wang, CW Dick, TY James, JG Kueneman, J LaManna, JA Lutz, IR McGregor, SM McMahon, GG Parker, JD Parker. Frontiers in Ecology & Evolution, https://doi.org/10.3389/fevo.2021.679638.
Evaluating Lower Athabasca River Sediment Metal Concentrations from Alberta Oil Sands Monitoring Programs Using Predevelopment Baselines
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Effects of nutrient addition on endophyte-associated grass invasion in a long-term, old-field community experiment
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Pilot-scale comparison of sodium silicates, orthophosphate and pH adjustment to reduce lead release from lead service lines
K Aghasadeghi, S Peldszus, BF Trueman, A Mishrra, MG Cooke, RM Slawson, DE Giammar, GA Gagnon & PM Huck. Water Research, 195: 116955.
Summary and synthesis of Changing Cold Regions Network (CCRN) research in the interior of western Canada–Part 2: Future change in cryosphere, vegetation, and hydrology
CM DeBeer, HS Wheater, JW Pomeroy, AG Barr, JL Baltzer, JF Johnstone, et al. Hydrology and Earth System Sciences, 25: 1849-1882
Complexation reduces nickel toxicity to purple sea urchin embryos (Strongylocentrotus purpuratus), a test of biotic ligand principles in seawater.
2021. Ecotoxicol Environ Saf., 216: 112156. doi: 10.1016/j.ecoenv.2021.112156.
Seasonal thaw and landscape position determine foliar functional traits and whole-plant water use in tall shrubs on the low arctic tundra.
Black, K. L., Wallace, C. A., Baltzer, J. L. 2021. New Phytol., doi: 10.1111/nph.17375.
Crayfish tissue metabolomes effectively distinguish impacts of wastewater and agriculture in aquatic ecosystems.
NM Izral, RB Brua, JM Culp, AG Yates. 2021. Science of The Total Environment, 760: 143322.
Unexpected greening in a boreal permafrost peatland undergoing forest loss is partially attributable to tree species turnover.
Dearborn, K.D., & Baltzer, J. L. 2021. Glob Chang Biol., doi: 10.1111/gcb.15608.
Pilot-scale comparison of sodium silicates, orthophosphate and pH adjustment to reduce lead release from lead service lines.
Aghasadeghi, K., Peldszus, S., Trueman, B. F., Mishrra, A., Cooke, M. G., Slawson, R. M., Giammar, D. E., Gagnon, G. A., & Huck, P. M. 2021. Water research, 195: 116955-116955.
Which physicochemical variables should zooplankton ecologists measure when they conduct field studies?
DK Gray, M Elmarsafy, JM Vucic, M Teillet, TJ Pretty, RS Cohen, M Huynh. Journal of Plankton Research, 43: 180-198.
Non-uniform growth dynamics of a dominant boreal tree species Picea mariana in the face of rapid climate change.
Sniderhan, AE, Mamet, SD, Baltzer, JL. 2021. Canadian Journal of Forest Research, https://doi.org/10.1139/cjfr-2020-0188
Predicting patterns of terrestrial lichen biomass recovery after boreal wildfires.
Gruel, R, Degré- Timmons, G, Baltzer, JL, Johnstone, JF, McIntire, E, Day, NJ, Hart, S, McLoughlin, P, Schmigelow, F, Turetsky, MR, Truchon-Savard, A, van Telgen, M, Cumming, SG. 2021. Ecosphere, https://doi.org/10.1002/ecs2.3481.
Can zooplankton on the North American Great Plains “keep up” with climate‐driven salinity change?
M Elmarsafy, KL Tasky, DK Gray. Limnology and Oceanography, 66: 865-877.
Biotic homogenization destabilizes ecosystem functioning by decreasing spatial asynchrony.
Wang, S., Loreau, M., de Mazancourt, C., Isbell, F., Beierkuhnlein, C., Connolly, J., Deutschman, D. H., Dolezal, J., Eisenhauer, N., Hector, A., Jentsch, A., Kreyling, J., Lanta, V., Leps, J., Polley, H. W., Reich, P. B., van Ruijven, J., Schmid, B., Tilman, D., Wilsey, B., & Craven, D. 2021. Ecology: e03332-e03332.
Factors influencing the structure of macroinvertebrate communities in subarctic lakes affected by wildfires.
TJ Pretty, CM Chanyi, C Kuhn, DK Gray. Canadian Journal of Fisheries and Aquatic Sciences, 78: 218-231.
Permafrost thaw in boreal peatlands is rapidly altering forest community composition.
Dearborn, K. D., Wallace, C. A., Patankar, R., & Baltzer, J. L. 2021. Journal of Ecology, 109(3): 1452-1467.
Comparison of Plant Metabolites in Root Exudates of Lolium perenne Infected with Different Strains of the Fungal Endophyte Epichloe festucae var. lolii.
Patchett, A., & Newman, J. A. 2021. Journal of fungi (Basel, Switzerland), 7(2).
Environmental variables associated with littoral macroinvertebrate community composition in Arctic lakes.
RS Cohen, DK Gray, JM Vucic, AD Murdoch, S Sharma. 2021. Canadian Journal of Fisheries and Aquatic Sciences, 78: 110-123.
Relationships of total phosphorus and chlorophyll in lakes worldwide.
Quinlan, R., Filazzola, A., Mahdiyan, O., Shuvo, A., Blagrave, K., Ewins, C., Moslenko, L., Gray, D. K., O'Reilly, C. M., & Sharma, S. 2021. Limnology and Oceanography, 66(2): 392-404.
A toxic unit and additive index approach to understanding the interactions of two piscicides, TFM and niclosamide, in rainbow trout.
Hepditch, S., Birceanu, O., & Wilkie, M. P. 2021. Environmental toxicology and chemistry. 40: 1419-1430. doi: 10.1002/etc.4994.
Effects of prolonged sedimentation from permafrost degradation on macroinvertebrate drift in Arctic streams.
B Levenstein, J Lento, J Culp. 2021. Limnology and Oceanography, 66: S157-S168.
Mapping and understanding the vulnerability of northern peatlands to permafrost thaw at scales relevant to community adaptation planning.
Gibson, C, Kottenie, K, Gingras-Hill, T, Kokelj, SK, Baltzer, JL, Chasmer, L, Turetsky, MR. 2021. Environmental Research Letters, https://doi.org/10.1088/1748-9326/abe74b
Characterization of a bovine intestinal myofibroblast cell line and stimulation using phytoglycogen-based nanoparticles bound to inosine monophosphate.
Jenik, K., Alkie, T. N., Moore, E., Dejong, J. D., Lee, L. E. J., & DeWitte-Orr, S. J. 2021. In Vitro Cellular & Developmental Biology-Animal, 57(1): 86-94.
Functional Oligomeric Forms of Uncoupling Protein 2: Strong Evidence for Asymmetry in Protein and Lipid Bilayer Systems.
Ardalan, A., Sowlati-Hashjin, S., Uwumarenogie, S. O., Fish, M., Mitchell, J., Karttunen, M., Smith, M. D., & Jelokhani-Niaraki, M. 2021. The Journal of Physical Chemistry. B, 125(1): 169-183.
Environmental drivers of Sphagnum growth in peatlands across the Holarctic region.
Bengtsson, F., Rydin, H., Baltzer, J. L., Bragazza, L., Bu, Z.-J., Caporn, S. J. M., Dorrepaal, E., Flatberg, K. I., Galanina, O., Galka, M., Ganeva, A., Goia, I., Goncharova, N., Hajek, M., Haraguchi, A., Harris, L. I., Humphreys, E., Jirousek, M., Kajukalo, K., Karofeld, E., Koronatova, N. G., Kosykh, N. P., Laine, A. M., Lamentowicz, M., Lapshina, E., Limpens, J., Linkosalmi, M., Ma, J.-Z., Mauritz, M., Mitchell, E. A. D., Munir, T. M., Natali, S. M., Natcheva, R., Payne, R. J., Philippov, D. A., Rice, S. K., Robinson, S., Robroek, B. J. M., Rochefort, L., Singer, D., Stenoien, H. K., Tuittila, E.-S., Vellak, K., Waddington, J. M., & Granath, G. 2021. Journal of Ecology, 109(1): 417-431.
Methylmercury biomagnification in coastal aquatic food webs from western Patagonia and western Antarctic Peninsula.
Chiang, G., Kidd, K. A., Diaz-Jaramillo, M., Espejo, W., Bahamonde, P., O'Driscoll, N. J., & Munkittrick, K. R. 2021. Chemosphere, 262.
ForestGEO: Understanding forest diversity and dynamics through a global observatory network.
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The ontogeny of Na+ uptake in larval rainbow trout reared in waters of different Na+ content.
Gallagher, E. J., Harter, T. S., Wilson, J. M., & Brauner, C. J. 2021. Journal of Comparative Physiology B-Biochemical Systems and Environmental Physiology, 191(1): 29-42.
Drivers of water quality changes within the Laurentian Great Lakes region over the past 40 years.
Mahdiyan, O., Filazzola, A., Molot, L. A., Gray, D., & Sharma, S. 2021. Limnology and Oceanography, 66(1): 237-254.
Spatial and stratigraphic variation of near-surface ground ice in discontinuous permafrost of the taiga shield.
Paul, J. R., Kokelj, S. V., & Baltzer, J. L. 2021. Permafrost and Periglacial Processes, 32(1): 3-18.
The Transporter Classification Database (TCDB): 2021 update.
Saier, M. H., Jr., Reddy, V. S., Moreno-Hagelsieb, G., Hendargo, K. J., Zhang, Y., Iddamsetty, V., Lam, K. J. K., Tian, N., Russum, S., Wang, J., & Medrano-Soto, A. 2021. Nucleic Acids Research, 49(D1): D461-D467.
Total phosphorus and climate are equally important predictors of water quality in lakes.
Shuvo, A., O'Reilly, C. M., Blagrave, K., Ewins, C., Filazzola, A., Gray, D., Mahdiyan, O., Moslenko, L., Quinlan, R., & Sharma, S. 2021. Aquatic Sciences, 83(1).
The Escherichia coli cellulose synthase subunit G (BcsG) is a Zn2+-dependent phosphoethanolamine transferase.
Anderson, A. C., Burnett, A. J. N., Hiscock, L., Maly, K. E., & Weadge, J. T. 2020. Journal of Biological Chemistry, 295(18): 6225-6235.
Proton Transport in Mitochondrial UCP2 is Regulated by a Matrix-Oriented Salt-Bridge Network.
Ardalan, A., Sowlati-Hashjin, S., Karttunen, M., Smith, M. D., & Jelokhani-Niaraki, M. 2020. Biophysical Journal, 118(3): 449A-449A.
No beating around the bush: the impact of projected high-latitude vegetation transitions on soil and ecosystem respiration.
Baltzer, J. L., & Sonnentag, O. 2020. New Phytologist, 227(6): 1591-1593.
Extra-gastric expression of the proton pump H+/K+-ATPase in the gills and kidney of the teleost Oreochromis niloticus.
Barnawi, E. A., Doherty, J. E., Ferreira, P. G., & Wilson, J. M. 2020. Journal of Experimental Biology, 223(16).
Environmental drivers of Sphagnum growth in peatlands across the Holarctic region.
Bengtsson, F, Rydin, H, Baltzer, J, Bragazza, L, Bu, Z-J, Caporn, SJM, Dorrepaal, E, Flatberg, KI, Galanina, O, Gałka, M, Ganeva, A, Goia, I, Goncharova, N, Hájek, M, Haraguchi, A, Harris, LI, Humphreys, E, Jiroušek, M, Kajukało, K, Karofeld, E, Koronatova, NG, Kosykh, NP, Laine, AM, Lamentowicz, M, Lapshina, E, Limpens, J, Linkosalmi, M, Ma, J-Z, Mauritz, M, Mitchell, EAD, Munir, TM, Natali, SM, Natcheva, R, Payne, RJ, Philippov, DA, Rice, SK, Robinson, S, Robroek, BJM, Rochefort, L, Singer, D, Stenøien, HK, Tuittila, E-S, Vellak, K, Waddington, JM, Granath, G. 2021. Journal of Ecology 109:417–431. https://doi.org/10.1111/1365-2745.13499.
Sublethal effects of wild-type and a vIF-2 alpha-knockout Frog virus 3 on postmetamorphic wood frogs (Rana sylvatica): potential for a stage-specific reservoir.
Bienentreu, J.-F., Grayfer, L., Schock, D. M., Guerreiro, M., Mehes-Smith, M., DeWitte-Orr, S. J., Robert, J., Brunetti, C. R., & Lesbarreres, D. 2020. S Facets, 5: 738-757.
Cuscuta sect. Californicae (Convolvulaceae) Revisited: 'Cryptic' Speciation and Host Range Differentiation.
Costea, M., ElMiari, H., Farag, R., Fleet, C., & Stefanovic, S. 2020. Systematic Botany, 45(3): 638-651.
Ecological causal assessment of benthic condition in the oil sands region, Athabasca River, Canada.
Culp, J. M., Brua, R. B., Luiker, E., & Glozier, N. E. 2020. Science of the Total Environment, 749.
Identifying Functional Impacts of Heat-Resistant Fungi on Boreal Forest Recovery After Wildfire.
Day, N. J., Cumming, S. G., Dunfield, K. E., Johnstone, J. F., Mack, M. C., Reid, K. A., Turetsky, M. R., Walker, X. J., & Baltzer, J. L. 2020. Frontiers in Forests and Global Change, 3.
Fire characteristics and environmental conditions shape plant communities via regeneration strategy.
Day, N. J., White, A. L., Johnstone, J. F., Degre-Timmons, G. E., Cumming, S. G., Mack, M. C., Turetsky, M. R., Walker, X. J., & Baltzer, J. L. 2020. Ecography, 43(10): 1464-1474.
Reproductive status of walleye (Sander vitreus) and lake whitefish (Coregonus clupeaformis) in two large, shallow Canadian subarctic lakes.
Dixon, H. J., Harrison, G., Lister, A. L., & MacLatchy, D. L. 2020. Environmental Biology of Fishes, 103(9): 1119-1136.
Can zooplankton on the North American Great Plains "keep up" with climate-driven salinity change?
Elmarsafy, M., Tasky, K. L., & Gray, D. K. 2020. Limnology and Oceanography.
The Salmonella enterica Plasmidome as a Reservoir of Antibiotic Resistance.
Emond-Rheault, J. G., Hamel, J., Jeukens, J., Freschi, L., Kukavica-Ibrulj, I., Boyle, B., Tamber, S., Malo, D., Franz, E., Burnett, E., Daigle, F., Arya, G., Sanderson, K., Wiedmann, M., Slawson, R. M., Weadge, J. T., Stephan, R., Bekal, S., Gruenheid, S., Goodridge, L. D., & Levesque, R. C. 2020. Microorganisms, 8(7).
A database of chlorophyll and water chemistry in freshwater lakes.
Filazzola, A., Mahdiyan, O., Shuvo, A., Ewins, C., Moslenko, L., Sadid, T., Blagrave, K., Imrit, M. A., Gray, D. K., Quinlan, R., O'Reilly, C. M., & Sharma, S. 2020. Scientific Data, 7(1).
Examining the Impacts of CO2 Concentration and Genetic Compatibility on Perennial Ryegrass-Epichloe festucae var lolii Interactions.
Geddes-McAlister, J., Sukumaran, A., Patchett, A., Hager, H. A., Dale, J. C. M., Roloson, J. L., Prudhomme, N., Bolton, K., Muselius, B., Powers, J., & Newman, J. A. 2020. Journal of Fungi, 6(4).
Effects of elevated CO2 on competition between native and invasive grasses.
Hager, H. A., Ryan, G. D., & Newman, J. A. 2020. Oecologia, 192(4): 1099-1110.
Abruptly and irreversibly changing Arctic freshwaters urgently require standardized monitoring.
Heino, J., Culp, J. M., Erkinaro, J., Goedkoop, W., Lento, J., Ruhland, K. M., & Smol, J. P. 2020. Journal of Applied Ecology, 57(7): 1192-1198.
Progress in quickly finding orthologs as reciprocal best hits: comparing blast, last, diamond and MMseqs2.
Hernandez-Salmeron, J. E., & Moreno-Hagelsieb, G. 2020. Bmc Genomics, 21(1).
Impact of wildfire on permafrost landscapes: A review of recent advances and future prospects.
Holloway, J. E., Lewkowicz, A. G., Douglas, T. A., Li, X., Turetsky, M. R., Baltzer, J. L., & Jin, H. 2020. Permafrost and Periglacial Processes, 31(3): 371-382.
Spatial and temporal variation in Arctic freshwater chemistry-Reflecting climate-induced landscape alterations and a changing template for biodiversity.
Huser, B. J., Futter, M. N., Bogan, D., Brittain, J. E., Culp, J. M., Goedkoop, W., Gribovskaya, I., Karlsson, J., Lau, D. C. P., Ruhland, K. M., Schartau, A. K., Shaftel, R., Smol, J. P., Vrede, T., & Lento, J. 2020. Freshwater Biology.
Shoot Extracts from Two Low Nodulation Mutants Significantly Reduce Nodule Number in Pea.
Huynh, C. A., & Guinel, F. C. 2020. Plants, 9:1505. doi: 10.3390/plants9111505.
Can dispersal buffer against salinity-driven zooplankton community change in Great Plains' lakes?
Huynh, M., & Gray, D. K. 2020. Freshwater Biology, 65(2): 337-350.
Intense proliferation of rDNA sites and heterochromatic bands in two distantly related Cuscuta species (Convolvulaceae) with very large genomes and symmetric karyotypes.
Ibiapino, A., Angel Garcia, M., Costea, M., Stefanovic, S., & Guerra, M. 2020. Genetics and Molecular Biology, 43(3).
Carbonatites as rock fertilizers: A review.
Jones, J. M. C., Guinel, F. C., & Antunes, P. M. 2020. Rhizosphere, 13.
Metabolic role of aldehyde dehydrogenases in Pseudomonas putida KT2440.
Julian-Sanchez, A., Castrejon-Gonzaga, A., Moreno-Hagelsieb, G., Munoz-Clares, R., & Riveros-Rosas, H. 2020. Faseb Journal, 34.
Biodiversity patterns of Arctic diatom assemblages in lakes and streams: Current reference conditions and historical context for biomonitoring.
Kahlert, M., Ruhland, K. M., Lavoie, I., Keck, F., Saulnier-Talbot, E., Bogan, D., Brua, R. B., Campeau, S., Christoffersen, K. S., Culp, J. M., Karjalainen, S. M., Lento, J., Schneider, S. C., Shaftel, R., & Smol, J. P. 2020. Freshwater Biology.
TRY plant trait database - enhanced coverage and open access.
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